DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope.

Modern digital pathology department has evolved to produce a whole-slide image data at petabyte scale, a treasure chest unprecedented for a medical machine learning tasks. Unfortunately, most of the digital slide is not described at the level of the image, hindering the large-scale application of supervised learning. Users labeling is expensive, requires a pathologist with decades of training and responsibility exceptional clinical care.
This problem is exacerbated by the United States Food and Drug Administration ruling that the primary diagnosis must come from the slide glass rather than digital images. We present a framework of end-to-end first to solve this problem, collect the explanation nonintrusive during routine clinical pathologist working this: commodities (i) 3D-print a special microscope camera mounts are used for video recording Slide- glass-based clinical diagnostic process ; (Ii) after a routine scan the whole slide, registered video frames to digital slide; (Iii) the estimated time of motion and observations to produce spatial and temporal saliency map of the entire slide.
Demonstrating the utility of this explanation, we train a neural network convolutional that detects elevated area relevant diagnosis, then report the accuracy of 85.15% in the bladder and in the prostate 91.40%, with 75.00% accuracy during training but predicting prostate bladder, although different pathologists examine a different network. When the train in one patient but other test, AUROC in bladder was 0.79 ± 0.11 and 0.96 ± 0:04 prostate.
Cost-effective and automated acquisition of the whole slide images are obstacles to wide-scale deployment of digital pathology. In this article, the calculation of which is coupled approaches to the development of the microscope slide scanner automatically presented. Realization of the prototype device built using inexpensive optical components off-the-shelf and detailed motors.
Application of advanced prototypes for clinical diagnostic tests is shown by producing good quality digital images of malaria infected blood smears. Furthermore, the slide images obtained were processed to identify and count the number of red blood cells infected with malaria and thus to estimate the level of quantitative parasitaemia. The prototype presented will enable cost-effective deployment of slide-based testing cyto-diagnostic in endemic areas.

Boveri Research Zoological Station in Naples: The rediscovery of the original microscope slides at the University of Würzburg.
Eric Davidson wrote about Theodor Boveri: “From his own research, and perhaps most importantly, his interpretation of the public, from the underlying paradigm of modern questions to base genome of embryogenesis” (Davidson, 1985).
As luck would have it, “primary data” from the experimental work Boveri, the microscope slides prepared by him and his wife Marcella during several stays at the Zoological Station in Naples (1901-1902, 1911-1912 and 1914), survived at the University of Würzburg. More than 600 slides there and despite their age they are in surprisingly good condition.
Microscope Slide Boxes,100-Place, Green |
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LC7003-100 | GenDepot | 100/CS | EUR 967.2 |
Microscope Slide Boxes,100-Place, Red |
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LC7004-100 | GenDepot | 100/CS | EUR 967.2 |
Microscope Slide Boxes,100-Place, Yellow |
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LC7005-100 | GenDepot | 100/CS | EUR 967.2 |
Microscope Slide Boxes,100-Place, White |
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Microscope Slide Boxes,25-Place, Blue |
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LC7007-100 | GenDepot | 100/CS | EUR 684 |
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LC7010-100 | GenDepot | 100/CS | EUR 684 |
Microscope Slide Boxes,25-Place, White |
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LC7011-100 | GenDepot | 100/CS | EUR 684 |
Microscope slide dispenser for box of 72 standard 25 x 75mm slides |
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M7100-SD | MTC Bio | 1/pack | EUR 83.89 |
Description: Microscope slide dispenser |
Gelatin-coated microscope slides (75 x 50 mm) |
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PO105 | FD Neurotechnologies | 100 slides | EUR 420 |
Microscope Slide Boxes,100-Place, Blue |
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LC7002-001 | GenDepot | Ea | EUR 84 |
Microscope Slide Boxes,100-Place, Blue |
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LC7002-010 | GenDepot | 10/PK | EUR 181.2 |
Microscope Slide Boxes,100-Place, Green |
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LC7003-001 | GenDepot | Ea | EUR 84 |
Microscope Slide Boxes,100-Place, Green |
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LC7003-010 | GenDepot | 10/PK | EUR 181.2 |
Microscope Slide Boxes,100-Place, Red |
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LC7004-001 | GenDepot | Ea | EUR 84 |
Microscope Slide Boxes,100-Place, Red |
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Microscope Slide Boxes,100-Place, Yellow |
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LC7005-001 | GenDepot | Ea | EUR 84 |
Microscope Slide Boxes,100-Place, Yellow |
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Microscope Slide Boxes,100-Place, White |
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Microscope Slide Boxes,100-Place, White |
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Microscope Slide Boxes,25-Place, Blue |
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LC7007-001 | GenDepot | EA | EUR 79.2 |
Microscope Slide Boxes,25-Place, Blue |
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Microscope Slide Boxes,25-Place, Green |
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Microscope Slide Boxes,25-Place, Green |
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Microscope Slide Boxes,25-Place, Red |
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Microscope Slide Boxes,25-Place, Red |
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Microscope Slide Boxes,25-Place, Yellow |
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Microscope Slide Boxes,25-Place, Yellow |
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Microscope Slide Boxes,25-Place, White |
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LC7011-001 | GenDepot | EA | EUR 79.2 |
Microscope Slide Boxes,25-Place, White |
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LC7011-010 | GenDepot | 10/PK | EUR 148.8 |
Slide Box White for 25 Slides |
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MIC4000 | Scientific Laboratory Supplies | EACH | EUR 9.69 |
SLIDE BOX; 100 PLACE; BLUE |
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HS15991A | Scientific Laboratory Supplies | EACH | EUR 16.47 |
Box for 25 microscope slides purple colour |
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DD49719 | Scientific Laboratory Supplies | EACH | EUR 15.28 |
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DD49720 | Scientific Laboratory Supplies | EACH | EUR 15.28 |
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DD49721 | Scientific Laboratory Supplies | EACH | EUR 15.28 |
Slide Box Blue 100 Slides |
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MIC3550 | Scientific Laboratory Supplies | EACH | EUR 23.14 |
Slide Box Green 100 Slides |
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MIC3552 | Scientific Laboratory Supplies | EACH | EUR 21.61 |
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MIC3554 | Scientific Laboratory Supplies | EACH | EUR 33.97 |
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MIC3556 | Scientific Laboratory Supplies | EACH | EUR 34.43 |
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MIC3558 | Scientific Laboratory Supplies | EACH | EUR 32.83 |
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MIC3560 | Scientific Laboratory Supplies | EACH | EUR 26.79 |
Slide Box Polystyrene 100 Slides |
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MIC4012 | Scientific Laboratory Supplies | EACH | EUR 24.28 |
Slide Box Blue 25 Slides |
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MIC3562 | Scientific Laboratory Supplies | EACH | EUR 19.13 |
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MIC3564 | Scientific Laboratory Supplies | EACH | EUR 19.13 |
Slide Box Red 25 Slides |
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MIC3566 | Scientific Laboratory Supplies | EACH | EUR 19.13 |
Slide Box White 25 Slides |
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MIC3570 | Scientific Laboratory Supplies | EACH | EUR 19.13 |
Microscope Slide Box 25 ULT safe |
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MIC4092 | Scientific Laboratory Supplies | EACH | EUR 17.62 |
Polystyrene box for 100 microscope slides blue colour |
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DD139537 | Scientific Laboratory Supplies | EACH | EUR 10.49 |
Polystyrene box for 100 microscope slides green colour |
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DD139538 | Scientific Laboratory Supplies | EACH | EUR 10.49 |
Plastic box for 100 microscope slides (blue colour) |
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DD37501 | Scientific Laboratory Supplies | EACH | EUR 29.64 |
Plastic box for 100 microscope slides (red colour) |
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DD37503 | Scientific Laboratory Supplies | EACH | EUR 29.64 |
Economy Slide box 100 Place BLUE |
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MIC3586 | Scientific Laboratory Supplies | EACH | EUR 17.82 |
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Economy Slide box 100 Place WHITE |
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MIC3590 | Scientific Laboratory Supplies | EACH | EUR 16.75 |
Economy Slide box 25 Place BLUE |
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Economy Slide box 25 Place WHITE |
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MIC3584 | Scientific Laboratory Supplies | EACH | EUR 14.02 |
Premium Microscope Slide Box 50-Place Cork Blue |
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MIC4214 | Scientific Laboratory Supplies | EACH | EUR 21.27 |
Premium Microscope Slide Box 50-Place Cork Red |
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MIC4216 | Scientific Laboratory Supplies | EACH | EUR 19.53 |
PREMIUM SLIDE BOX 100 PLACE CORK LINI |
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HS15994G | Scientific Laboratory Supplies | EACH | EUR 23.6 |
PREMIUM SLIDE BOX 25 PLACE FOAM LININ |
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HS15989R | Scientific Laboratory Supplies | EACH | EUR 16.99 |
Plastic box for 100 microscope slides (assorted colours) cork bottom |
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DD10197 | Scientific Laboratory Supplies | PK5 | EUR 83.22 |
FUNNEL, 75 MM, PP |
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6120P-75 | CORNING | 12/pk | EUR 48 |
Description: Reusable Plastics; Reusable Funnels |
2 Place Microscope Slide Mailer PP Natural |
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MIC3172 | Scientific Laboratory Supplies | PK25 | EUR 37.73 |
Slide Box White for 50 Slides |
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MIC4004 | Scientific Laboratory Supplies | EACH | EUR 11.53 |
Microscope Slide Box True North |
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MIC4090 | Scientific Laboratory Supplies | EACH | EUR 38.19 |
Slide Box 25 Slide Polystyrene |
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MIC4066 | Scientific Laboratory Supplies | EACH | EUR 12.54 |
2 Place Microscope Slide Mailer PP Assorted Colours |
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MIC3170 | Scientific Laboratory Supplies | PK25 | EUR 38.65 |
Plastic box for 50 microscope slides (blue colour) |
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DD37507 | Scientific Laboratory Supplies | EACH | EUR 25.08 |
Slide Box Storage Rack 15 Place |
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MIC3180 | Scientific Laboratory Supplies | EACH | EUR 518.7 |
Micrewtube Box Blue 100 Place |
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T350-100B | Scientific Laboratory Supplies | PK24 | EUR 359.1 |
Premium Plain Glass Microscope Slides, 144 /pk, 1 mm thickness, 25 mm wide by 73 mm long |
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M-ACC-GSL9 | MiTeGen | 200 TIPS | EUR 65 |
Description: Premium Plain Glass Microscope Slides, 144 /pk, 1 mm thickness, 25 mm wide by 73 mm long |
Slide Tray Singles x 20 Slides |
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MIC4200 | Scientific Laboratory Supplies | EACH | EUR 14.61 |
PC Freezer Box 100-Place 133x133x50mm |
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ARG1720 | Scientific Laboratory Supplies | PK4 | EUR 94.62 |
Cardboard tray for 20 microscope slides |
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DD65205 | Scientific Laboratory Supplies | EACH | EUR 15.85 |
PC Freezer Box 25-Place 76x76x27mm |
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ARG1728 | Scientific Laboratory Supplies | PK4 | EUR 71.82 |
2D PolarSafe PC Box 100-Place for 2 Cryovials |
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ARG1214 | Scientific Laboratory Supplies | EACH | EUR 47.88 |
Proteinase-resistant microscope slides |
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PO102 | FD Neurotechnologies | 100 slides | EUR 236.4 |
Vinyl microscope slides RINZL |
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DD52951 | Scientific Laboratory Supplies | PK144 | EUR 24.62 |
Microscope slides, positive charged, 45° corners, frosted on one end, 25 x 75mm |
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M7100-45 | MTC Bio | 72/pack | EUR 75.4 |
Description: Microscope slides positive charged |
Microscope slides, positive charged, 90° corners, frosted on one end, 25 x 75mm |
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M7100-90 | MTC Bio | 72/pack | EUR 75.4 |
Description: Microscope slides positive charged |
Microscope Slide Polysine 75x25x1mm |
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MIC3050 | Scientific Laboratory Supplies | PK72 | EUR 34.66 |
Sulfur 75 ug/g (75 PPM) for AA and ICP 100 grams in no.2 Diesel Fuel |
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SDFS-75-Y | Scientific Laboratory Supplies | 100ML | EUR 102.6 |
Etoposide (100 mM) |
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1043-100 | Biovision | EUR 183.6 |
Dual-Thickness MicroMounts, box of 20 with 75 micron aperture mounts; mounted on 18 mm rods |
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M2-L18SP-75 | MiTeGen | 20 MOUNTS | EUR 112 |
Description: Dual-Thickness MicroMounts, box of 20 with 75 micron aperture mounts; mounted on 18 mm rods |
Cardboard Freezer Box 2 100-Place + Grid |
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ARG1682 | Scientific Laboratory Supplies | EACH | EUR 9.58 |
SH-PEG-OH,100 |
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33-HE003002-100 | Biochempeg |
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Description: A high purity chemical with various applications in medical research, drug-release, nanotechnology and new materials research, cell culture. In the study of ligand, polypeptide synthesis support, a graft polymer compounds, new materials, and polyethylene glycol-modified functional coatings and other aspects of the active compound. |
Slide dryer attachment for 3 slides |
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B1000-03 | Benchmark Scientific | 1 PC | EUR 237.56 |
Superfrost® Plus microscope slides |
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PO103 | FD Neurotechnologies | box (72 slides) | EUR 123.6 |
Divider for 25 tubes (for boxes 136 x 136 mm) |
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DD39528 | Scientific Laboratory Supplies | EACH | EUR 3.65 |
12 X 75 MM POLYPROPYLENE CULTURE TUBE |
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T-1275-PP | CORNING | 500/pk | EUR 92.4 |
Description: Micro Tubes; Screw Cap Macro Tubes - Axygen |
12 X 75 MM POLYSTYRENE CULTURE TUBE. |
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T-1275-PS | CORNING | 500/pk | EUR 93.6 |
Description: Micro Tubes; Screw Cap Macro Tubes - Axygen |
FUNNEL, 100 MM, PP |
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6120P-100 | CORNING | 12/pk | EUR 56.4 |
Description: Reusable Plastics; Reusable Funnels |
ATP Solution (100 mM) |
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2121-100 | Biovision | EUR 151.2 |
Cardboard freezer box, hinged lid, insert for 25 snap-cap 5ml tubes, 5.25 x 5.25 x 3 inches |
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C2580-25 | MTC Bio | 5/pack | EUR 76.04 |
2D PolarSafe PC Box 100-Place for 3 3/4 Cryovials |
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ARG1216 | Scientific Laboratory Supplies | EACH | EUR 47.88 |
30-Place cardboard slide tray |
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MIC4201 | Scientific Laboratory Supplies | EACH | EUR 27.36 |
Drying Box, 100 X 40 X 10mm |
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DB031 | Bio Basic | 1 UNIT | EUR 91.32 |
Reservoir 1 well 100 mL (width 75 mm) |
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DD47179 | Scientific Laboratory Supplies | PK10 | EUR 33.86 |
Slide Rack (for 24 Slides), Stainless Steel |
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IMS003 | ScyTek Laboratories | 1 ea. | EUR 115.2 |
AXYGEN® 25-WELL COMB FOR USE WITH 10 CM GEL BOX, 1.0 MM THICKNESS |
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HGB10-25-1 | CORNING | 1/pk | EUR 70.8 |
Description: Lab Equipment; Axygen Branded EQ |
AXYGEN® 25-WELL COMB FOR USE WITH 10 CM GEL BOX, 2.0 MM THICKNESS |
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HGB10-25-2 | CORNING | 1/pk | EUR 70.8 |
Description: Lab Equipment; Axygen Branded EQ |
AXYGEN® 25-WELL COMB FOR USE WITH 20 CM GEL BOX, 1.0 MM THICKNESS |
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HGB20-25-1 | CORNING | 1/pk | EUR 82.8 |
Description: Lab Equipment; Axygen Branded EQ |
Black box 130 x 130 x 50 mm |
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DD139735 | Scientific Laboratory Supplies | EACH | EUR 14.82 |
Terumo Agani needle G 25 0.5 x 25 mm |
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DD050139B | Scientific Laboratory Supplies | PK100 | EUR 5.93 |
Axygen Microtube Box 100 x 1.5/2mL - Multi-Colour Pack - 142 x 142 x 55 mm |
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FRE0100 | Scientific Laboratory Supplies | PK5 | EUR 56.43 |
Nucleotide Set 100mM (4 x 100 mM) |
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110-010 | GeneOn | 4 x 100 µl | EUR 67.2 |
Nucleotide Set 100mM (4 x 100 mM) |
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110-011 | GeneOn | 4 x 200 µl | EUR 81.6 |
DUROPLAN Petri dish 100 x 20 mm |
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217554804 | Scientific Laboratory Supplies | PK10 | EUR 163.02 |
Dntp Set 100 Mm 4 x 25Umol |
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28406551 | Scientific Laboratory Supplies | EACH | EUR 191.52 |
Dntp Set 100 Mm 4 x 100Umol |
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Capto HiRes S 10 x 100 mm |
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29275879 | Scientific Laboratory Supplies | EACH | EUR 6306.48 |
Capto HiRes Q 10 x 100 mm |
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Microscope Slides Plain 1.2-1.5mm 76x26mm |
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MIC2154 | Scientific Laboratory Supplies | PK50 | EUR 3.88 |
Microscope Slides Plain 1.0-1.2mm 76x52mm |
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Axygen Culture Tube 12 x 75 mm Polypropylene |
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AXY2174 | Scientific Laboratory Supplies | PK1000 | EUR 75.24 |
BRAND(TM) MICROSCOPE SLIDE CUT EDGES |
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BR474701-2500EA | Scientific Laboratory Supplies | PK2500 | EUR 175.67 |
DB 5.7 Single block for 8 x 25 mm vials |
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BLO6072 | Scientific Laboratory Supplies | EACH | EUR 164.16 |
BRAND(TM) CAVITY SLIDES 76 X 26 MM 1.2 |
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BR475505-50EA | Scientific Laboratory Supplies | PK50 | EUR 149.91 |
Atp 100 Mm Sol. Wi Di 25 Um |
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27205601 | Scientific Laboratory Supplies | EACH | EUR 74.1 |
Gtp 100 Mm Sol. Wi Di 25 Um |
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27207601 | Scientific Laboratory Supplies | EACH | EUR 74.1 |
Square Petri dish with compartments 100 x 100 mm Sterilin |
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DD20009 | Scientific Laboratory Supplies | PK120 | EUR 216.6 |
Slide Holder Stainless Steel Rack (for 30 Slides) |
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IMS005 | ScyTek Laboratories | 1 ea. | EUR 96 |
1-Place Cardboard Slide Holders Cardboard |
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MIC4210 | Scientific Laboratory Supplies | PK25 | EUR 26.79 |
2-Place Cardboard Slide Holders Cardboard |
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Cardboard divider 64 place for R3014A box |
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ARG1688 | Scientific Laboratory Supplies | PK12 | EUR 44.35 |
Mini gel tubes, 7 x 2.5 x 75 mm, 8/pk |
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2394122 | Atto | 6unit | EUR 315.6 |
Anti-Human IgM Antibody | MM-80A |
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MM-80A | Immunology Consultants Laboratory | 1.0 mg | EUR 334 |
Description: Anti-Human IgM Antibody | MM-80A | Immunology Consultants Laboratory Host: Mouse Format: Unconjugated AP Product Type: Secondary Antibody Antibody Clonality: Monoclonal |
Humid Box for Metal Slide Tray |
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H011 | Insitus Biotechnologies | each | EUR 86.4 |
Cryo storage box, 100 place (10 x 10), polycarbonate, with hinged lid and unique barcode |
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R2100 | MTC Bio | 5/pack | EUR 99.7 |
Description: Cryo storage box 100 place (10 x 10) |
PAS/Glycogen, For Digestion (Control Slides) |
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TCS0024-25 | ScyTek Laboratories | 25 Slides | EUR 278.4 |
Sodium Pyruvate Solution, 100 mM Solution |
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CCM1753-100 | Bio Basic | 100 mL | EUR 73.01 |
100 mM CTAB |
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605 | AthenaES | 100 ml | EUR 117.6 |
Cycloheximide (100 mM) |
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1041-1 | Biovision | EUR 170.4 |
dUTP (100 mM) |
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P033-01 | Vazyme | 1 ml | EUR 172.8 |
dATP (100 mM) |
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P034-01 | Vazyme | 1 ml | EUR 172.8 |
dTTP (100 mM) |
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P035-01 | Vazyme | 1 ml | EUR 172.8 |
dCTP (100 mM) |
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P036-01 | Vazyme | 1 ml | EUR 172.8 |
dGTP (100 mM) |
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P037-01 | Vazyme | 1 ml | EUR 172.8 |
dCTP 100 mM |
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FYT014-100UL | Yeastern Biotech | 100 µl | Ask for price |
BRAND(TM) STAINING TRAY FOR 25 SLIDES |
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BR471400-5EA | Scientific Laboratory Supplies | PK5 | EUR 46.63 |
Cardboard Dividers 25-Place 67x67x32mm |
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ARG1684 | Scientific Laboratory Supplies | PK12 | EUR 38.3 |
DiagNano Fluorophore Labeled Gold Nanoparticles, 75 nm |
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GFL-75 | Creative Diagnostics | 1 mL | EUR 1263.6 |
MgCl2 25 mM |
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BA00154 | Bioatlas | 5x1.8ml | EUR 74.4 |
Description: High purity buffer for various PCR applications. |
Cardboard divider for box 133 x 133 m height 30 mm for 10 x 10 o up to 12 mm |
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DD39887 | Scientific Laboratory Supplies | EACH | EUR 4.56 |
Single channel mini-pipette (130 mm) 25 ul, autoclavable |
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SCMP-25 | Alpha Diagnostics | 1 | EUR 110.4 |
Mini gel tubes, 7 x 2.5 x 100 mm, 8/pk |
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2394132 | Atto | 6unit | EUR 327.6 |
Plastic cell counting slides Kovas Slide |
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DD50126 | Scientific Laboratory Supplies | EACH | EUR 253.08 |
Triton® X-100 Detergent |
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B2394-100 | Biovision | EUR 130.8 |
38 Place Cold Rack Box |
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IB002A | Bio Basic | 1 UNIT | EUR 75.66 |
Freezer Storage Box 81-Place |
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Z756628-5EA | Scientific Laboratory Supplies | PK5 | EUR 67.83 |
Cardboard Divider for box 133 x 133 m height 65 mm for 9 x 9 tubes o up to 13.6 mm |
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Cardboard divider for box 133 x 133 m height 30 mm for 14 x 14 tubes o up to 8.3 mm |
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Cardboard divider for box 133 x 133 m height 30 mm for 13 x 13 tubes o up to 9 mm |
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Cardboard divider for box 133 x 133 m height 30 mm for 12 x 12 tubes o up to 9.8 mm |
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Cardboard divider for box 133 x 133 m height 30 mm for 8 x 8 tubes o up to 30 mm |
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DD39888 | Scientific Laboratory Supplies | EACH | EUR 4.22 |
TOMO Slides 1 Box |
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TOMO100 | ScyTek Laboratories | 100 Slides | EUR 108 |
Freezer box - dimensions 148 x 148 x 128 mm - uncompartmented - white |
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DD142346 | Scientific Laboratory Supplies | EACH | EUR 20.86 |
Star-Frost slides 76 x 26 mm (standard version) colour : orange |
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DD100205O | Scientific Laboratory Supplies | PK50 | EUR 12.54 |
Cardboard Dividers 25-Place for 2 or 3 Boxes |
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ARG1674 | Scientific Laboratory Supplies | PK12 | EUR 38.3 |
Regular Unleaded Gasoline 75% Weathered |
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S-WG-75 | Scientific Laboratory Supplies | 1ML | EUR 221.16 |
COVER GLASS, NO. 1, SQUARE 25 X 25MM |
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2845-25 | CORNING | 100/pk | EUR 134.4 |
Description: Cover Glass; Cover Glass, CGW |
COVER GLASS, NO. 2, SQUARE 25 X 25MM |
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2855-25 | CORNING | 50/pk | EUR 103.2 |
Description: Cover Glass; Cover Glass, CGW |
Slide labeled and dated in handwriting Boveri and thus can be assigned to publish the experimental work at sea urchin development. Results Boveri allowed to reveal the role of the cell nucleus and chromosomes in the development and heritage. Here, I present an overview of the slides in the context Boveri work together with images of selected specimens taken from the original slide. It is planned to check the slide in more detail, taking high-resolution pictures a series of specimens of significant focus and make them available online.